GeneNames

From Wikili
Jump to: navigation, search

GeneNames are the most important link between genes ...

Gscope has now following functions to manipulate the gene names. See the test at below

  • HGNC integrates a download from the HUGO Gene Nomenclature Committee
    • HGNC ListOf Header
    • HGNC ListOf HGNC_ID
    • HGNC ListOf GeneName
    • HGNC ListOf Synonym
    • HGNC ListOf SynoTxt
    • HGNC Pax6
    • HGNC Pax6 header (within HGNC ListOf Header)
  • MGI integrates a download from Mouse Genome Informatics concerning the gene alias for the mouse
    • MGI ListOf Header
    • MGI ListOf MGIID
    • MGI ListOf GeneName
    • MGI Pax6 MGIID
    • MGI MGI:97490 GeneName
    • MGI Pax6 ListOfSyn
    • MGI MGI:97490 ListOfSyn
    • MGI Pax-6 Reference_MgiId
    • MGi Pax-6 Reference_GeneName
    • MGI Pax6
    • MGI Pax6 header (within HGNC ListOf Header)
  • MGIHGNC integrates a download from Mouse Genome Informatics concerning the ortholgy between Mouse and Human
    • MGIHGNC ListOf Header
    • MGIHGNC ListOf MGIID
    • MGIHGNC ListOf HGNCID
    • MGIHGNC ListOf MGIGeneName
    • MGIHGNC ListOf HGNCGeneName
    • MGIHGNC MGI:97490 HGNCID
    • MGIHGNC HGNC:8620 MGIID
    • MGIHGNC Pax6
    • MGIHGNC Pax6 header (within MGIHGNC ListOf Header)
  • MouseFromHuman combines these programs
    • MouseFromHuman ListOf HumanHeader
    • MouseFromHuman ListOf MouseHeader
    • MouseFromHuman Pax6
    • MouseFromHuman Pax6 header (within MouseFromHuman ListOf MouseHeader)
  • HumanFromMouse combines these programs
    • HumanFromMouse ListOf HumanHeader
    • HumanFromMouse ListOf MouseHeader
    • HumanFromMouse Pax6
    • HumanFromMouse Pax6 header (within HumanFromMouse ListOf HumanHeader)
  • Synonyms
    • MouseSynonyms Pax6
    • HumanSynonyms Pax6
  • MGISW integrates a download from Mouse Genome Informatics concerning the link between MgiId, genename and the swissprot for the mouse
    • MGISW ListOf Header
    • MGISW ListOf MgiId
    • MGISW ListOf GeneName
    • MGISW MGI:1919200 LesSw
    • MGISW MGI:1919200
    • MGISW MGI:1919200 header (within MGISW ListOf Header)
    • MGISW Nanog
    • MGISW Nanog header (within MGISW ListOf Header)

Test it

  • get all about RdCVF in the

Mouse in the Human

  • get
    • Starting with the Human gene name RdCVF find the ortholog in the Mouse
    • Starting with the Mouse gene name RdCVF find the ortholog in the Human