Difference between revisions of "GeneNames"

Revision as of 10:45, 5 February 2013

GeneNames are the most important link between genes ...

Gscope has now following functions to manipulate the gene names. See the test at below

HGNC integrates a download from the HUGO Gene Nomenclature Committee
- HGNC ListOf Header
- HGNC ListOf HGNC_ID
- HGNC ListOf GeneName
- HGNC ListOf Synonym
- HGNC ListOf SynoTxt
- HGNC Pax6
- HGNC Pax6 header (within HGNC ListOf Header)
MGI integrates a download from Mouse Genome Informatics concerning the gene alias for the mouse
- MGI ListOf Header
- MGI ListOf MGIID
- MGI ListOf GeneName
- MGI Pax6 MGIID
- MGI MGI:97490 GeneName
- MGI Pax6 ListOfSyn
- MGI MGI:97490 ListOfSyn
- MGI Pax-6 Reference_MgiId
- MGi Pax-6 Reference_Gn
- MGI Pax6
- MGI Pax6 header (within HGNC ListOf Header)
MGIHGNC integrates a download from Mouse Genome Informatics concerning the ortholgy between Mouse and Human
- MGIHGNC ListOf Header
- MGIHGNC ListOf MGIID
- MGIHGNC ListOf GeneName
- MGIHGNC Pax6
- MGIHGNC Pax6 header (within MGIHGNC ListOf Header)
MouseFromHuman combines these programs
- MouseFromHuman ListOf Header
- MouseFromHuman ListOf GeneName
HumanFromMouse combines these programs
- FromHumanFromMouse ListOf Header
- FromHumanFromMouse ListOf GeneName
- FromHumanFromMouse Pax6
- FromHumanFromMouse Pax6 header (within MouseFromHuman ListOf Header)
- FromHumanFromMousePax6 One_Genename (the most important)
- MouseFromHuman Pax6
- MouseFromHuman Pax6 header (within MouseFromHuman ListOf Header)
- MouseFromHuman Pax6 One_Genename (the most important)
Synonyms
- MouseSynonyms Pax6
- HumanSynonyms Pax6

get
- Starting with the Human gene name RdCVF find the ortholog in the Mouse
- Starting with the Mouse gene name RdCVF find the ortholog in the Human

@@ Line 17: / Line 17: @@
 ** MGI Pax6 MGIID
 ** MGI MGI:97490 GeneName
+** MGI Pax6 ListOfSyn
+** MGI MGI:97490 ListOfSyn
+** MGI Pax-6 Reference_MgiId
+** MGi Pax-6 Reference_Gn
 ** MGI Pax6
 ** MGI Pax6 header (within  HGNC ListOf Header)