Difference between revisions of "GeneNames"

From Wikili
Jump to: navigation, search
 
(17 intermediate revisions by 2 users not shown)
Line 15: Line 15:
 
** MGI ListOf MGIID
 
** MGI ListOf MGIID
 
** MGI ListOf GeneName
 
** MGI ListOf GeneName
 +
** MGI Pax6      MGIID
 +
** MGI MGI:97490 GeneName
 +
** MGI Pax6      ListOfSyn
 +
** MGI MGI:97490 ListOfSyn
 +
** MGI Pax-6    Reference_MgiId
 +
** MGi Pax-6    Reference_GeneName
 
** MGI Pax6
 
** MGI Pax6
 
** MGI Pax6 header (within  HGNC ListOf Header)
 
** MGI Pax6 header (within  HGNC ListOf Header)
Line 20: Line 26:
 
** MGIHGNC ListOf Header
 
** MGIHGNC ListOf Header
 
** MGIHGNC ListOf MGIID
 
** MGIHGNC ListOf MGIID
−
** MGIHGNC ListOf GeneName
+
** MGIHGNC ListOf HGNCID
 +
** MGIHGNC ListOf MGIGeneName
 +
** MGIHGNC ListOf HGNCGeneName
 +
** MGIHGNC MGI:97490 HGNCID
 +
** MGIHGNC HGNC:8620 MGIID
 
** MGIHGNC Pax6
 
** MGIHGNC Pax6
 
** MGIHGNC Pax6 header (within  MGIHGNC ListOf Header)
 
** MGIHGNC Pax6 header (within  MGIHGNC ListOf Header)
 
*MouseFromHuman combines these programs
 
*MouseFromHuman combines these programs
−
**MouseFromHuman ListOf Header
+
** MouseFromHuman ListOf HumanHeader
−
**MouseFromHuman ListOf GeneName
+
** MouseFromHuman ListOf MouseHeader
 +
** MouseFromHuman Pax6
 +
** MouseFromHuman Pax6 header (within MouseFromHuman ListOf MouseHeader)
 
*HumanFromMouse combines these programs
 
*HumanFromMouse combines these programs
−
**FromHumanFromMouse ListOf Header
+
** HumanFromMouse ListOf HumanHeader
−
**FromHumanFromMouse ListOf GeneName
+
** HumanFromMouse ListOf MouseHeader
−
**FromHumanFromMouse Pax6
+
** HumanFromMouse Pax6
−
**FromHumanFromMouse Pax6 header (within MouseFromHuman ListOf Header)
+
** HumanFromMouse Pax6 header (within HumanFromMouse ListOf HumanHeader)
−
**FromHumanFromMousePax6 One_Genename (the most important)
+
 
−
**MouseFromHuman Pax6
+
*Synonyms
−
**MouseFromHuman Pax6 header (within MouseFromHuman ListOf Header)
+
**MouseSynonyms Pax6
−
**MouseFromHuman Pax6 One_Genename (the most important)
+
**HumanSynonyms Pax6
 +
 
 +
*MGISW integrates a download from [http://www.informatics.jax.org/ Mouse Genome Informatics] concerning the link between MgiId, genename and the swissprot for the mouse
 +
** MGISW ListOf Header
 +
** MGISW ListOf MgiId
 +
** MGISW ListOf GeneName
 +
** MGISW MGI:1919200 LesSw
 +
** MGISW MGI:1919200
 +
** MGISW MGI:1919200 header (within MGISW ListOf Header)
 +
** MGISW Nanog
 +
** MGISW Nanog header (within MGISW ListOf Header)
  
 
==Test it==
 
==Test it==
−
* get all about Pax6 in the [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/gscope_html_server.tcsh?UCSCGenomes&MGI&Pax6 Mouse] in the [Human
+
* get all about RdCVF in the  
−
]
+
[http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/GscopeServer?EVImm&MGI&RdCVF Mouse] in the  
 +
[http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/GscopeServer?EVImm&HGNC&RdCVF Human]
 +
* get
 +
**Starting with the Human gene name RdCVF find the ortholog in the [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/GscopeServer?EVImm&MouseFromHuman&RdCVF&GeneName Mouse]
 +
**Starting with the Mouse gene name RdCVF find the ortholog in the [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/GscopeServer?EVImm&HumanFromMouse&RdCVF&GeneName Human]

Latest revision as of 11:01, 6 February 2013

GeneNames are the most important link between genes ...

Gscope has now following functions to manipulate the gene names. See the test at below

  • HGNC integrates a download from the HUGO Gene Nomenclature Committee
    • HGNC ListOf Header
    • HGNC ListOf HGNC_ID
    • HGNC ListOf GeneName
    • HGNC ListOf Synonym
    • HGNC ListOf SynoTxt
    • HGNC Pax6
    • HGNC Pax6 header (within HGNC ListOf Header)
  • MGI integrates a download from Mouse Genome Informatics concerning the gene alias for the mouse
    • MGI ListOf Header
    • MGI ListOf MGIID
    • MGI ListOf GeneName
    • MGI Pax6 MGIID
    • MGI MGI:97490 GeneName
    • MGI Pax6 ListOfSyn
    • MGI MGI:97490 ListOfSyn
    • MGI Pax-6 Reference_MgiId
    • MGi Pax-6 Reference_GeneName
    • MGI Pax6
    • MGI Pax6 header (within HGNC ListOf Header)
  • MGIHGNC integrates a download from Mouse Genome Informatics concerning the ortholgy between Mouse and Human
    • MGIHGNC ListOf Header
    • MGIHGNC ListOf MGIID
    • MGIHGNC ListOf HGNCID
    • MGIHGNC ListOf MGIGeneName
    • MGIHGNC ListOf HGNCGeneName
    • MGIHGNC MGI:97490 HGNCID
    • MGIHGNC HGNC:8620 MGIID
    • MGIHGNC Pax6
    • MGIHGNC Pax6 header (within MGIHGNC ListOf Header)
  • MouseFromHuman combines these programs
    • MouseFromHuman ListOf HumanHeader
    • MouseFromHuman ListOf MouseHeader
    • MouseFromHuman Pax6
    • MouseFromHuman Pax6 header (within MouseFromHuman ListOf MouseHeader)
  • HumanFromMouse combines these programs
    • HumanFromMouse ListOf HumanHeader
    • HumanFromMouse ListOf MouseHeader
    • HumanFromMouse Pax6
    • HumanFromMouse Pax6 header (within HumanFromMouse ListOf HumanHeader)
  • Synonyms
    • MouseSynonyms Pax6
    • HumanSynonyms Pax6
  • MGISW integrates a download from Mouse Genome Informatics concerning the link between MgiId, genename and the swissprot for the mouse
    • MGISW ListOf Header
    • MGISW ListOf MgiId
    • MGISW ListOf GeneName
    • MGISW MGI:1919200 LesSw
    • MGISW MGI:1919200
    • MGISW MGI:1919200 header (within MGISW ListOf Header)
    • MGISW Nanog
    • MGISW Nanog header (within MGISW ListOf Header)

Test it

  • get all about RdCVF in the

Mouse in the Human

  • get
    • Starting with the Human gene name RdCVF find the ortholog in the Mouse
    • Starting with the Mouse gene name RdCVF find the ortholog in the Human
Retrieved from "http://lbgi.fr/wikili/index.php?title=GeneNames&oldid=2892"