Difference between revisions of "Gscope"
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New : Gscope knows a lot about [[GeneNames]] | New : Gscope knows a lot about [[GeneNames]] | ||
| − | Gscope is an integrated platform allowing the analysis of all kind of genomic data. | + | * Gscope is an integrated platform allowing the analysis of all kind of genomic data. |
| − | + | * Gscope is written in Tcl/Tk and runs on all systems. | |
| − | Gscope is written in Tcl/Tk and runs on all systems. | + | * Gscope is specially designed to perform high throughput analysis. |
| − | + | * Gscope is mainly composed of | |
| − | Gscope is specially designed to perform high throughput analysis. | + | ** all tools necessary to create the basic data |
| − | + | ** analysis tools | |
| − | Gscope is mainly composed of | + | ** visualisation interface |
| − | * all tools necessary to create the basic data | + | * it allows also |
| − | * analysis tools | + | ** the creation and feeding of SQL relational databases |
| − | * visualisation interface | + | ** the quering and display of the available information through a web based interface |
| − | |||
| − | it allows also | ||
| − | * the creation and feeding of SQL relational databases | ||
| − | * the quering and display of the available information through a web based interface | ||
==Usage== | ==Usage== | ||
| − | Gscope works on a [[Gscope Project]] | + | * Gscope works on a [[Gscope Project]] |
| − | + | * A gscope Project can be a complete genome, a set of proteins, a set of genes, etc. | |
| − | A gscope Project can be a complete genome, a set of proteins, a set of genes, etc. | + | * To run Gscope you need to define the corresponding project. |
| − | |||
| − | To run Gscope you need to define the corresponding project. | ||
setgscoperr ''MyProject'' | setgscoperr ''MyProject'' | ||
gscope | gscope | ||
| − | If the project already exists the [[Gscope Environment Variables]] are setted. | + | * If the project already exists the [[Gscope Environment Variables]] are setted. |
| − | + | * If it concerns a new project the directories are created and th evariables are setted. (see [[New Gscope Project]]) | |
| − | If it concerns a new project the directories are created and th evariables are setted. (see [[New Gscope Project]]) | ||
==Gscope has some specific applications== | ==Gscope has some specific applications== | ||
Revision as of 10:50, 16 April 2009
What is Gscope ?
New : Gscope knows a lot about GeneNames
- Gscope is an integrated platform allowing the analysis of all kind of genomic data.
- Gscope is written in Tcl/Tk and runs on all systems.
- Gscope is specially designed to perform high throughput analysis.
- Gscope is mainly composed of
- all tools necessary to create the basic data
- analysis tools
- visualisation interface
- it allows also
- the creation and feeding of SQL relational databases
- the quering and display of the available information through a web based interface
Usage
- Gscope works on a Gscope Project
- A gscope Project can be a complete genome, a set of proteins, a set of genes, etc.
- To run Gscope you need to define the corresponding project.
setgscoperr MyProject gscope
- If the project already exists the Gscope Environment Variables are setted.
- If it concerns a new project the directories are created and th evariables are setted. (see New Gscope Project)
Gscope has some specific applications
- Gscope Clonage to design, order and manage oligos for Structural Genomics, it's a first step to a LIMS
