GeneNames

GeneNames are the most important link between genes ...

Gscope has now following functions to manipulate the gene names. See the test at below

• HGNC integrates a download from the HUGO Gene Nomenclature Committee
  • HGNC ListOf Header
  • HGNC ListOf HGNC_ID
  • HGNC ListOf GeneName
  • HGNC ListOf Synonym
  • HGNC ListOf SynoTxt
  • HGNC Pax6
  • HGNC Pax6 header (within HGNC ListOf Header)
• MGI integrates a download from Mouse Genome Informatics concerning the gene alias for the mouse
  • MGI ListOf Header
  • MGI ListOf MGIID
  • MGI ListOf GeneName
  • MGI Pax6 MGIID
  • MGI MGI:97490 GeneName
  • MGI Pax6 ListOfSyn
  • MGI MGI:97490 ListOfSyn
  • MGI Pax-6 Reference_MgiId
  • MGi Pax-6 Reference_GeneName
  • MGI Pax6
  • MGI Pax6 header (within HGNC ListOf Header)
• MGIHGNC integrates a download from Mouse Genome Informatics concerning the ortholgy between Mouse and Human
  • MGIHGNC ListOf Header
  • MGIHGNC ListOf MGIID
  • MGIHGNC ListOf HGNCID
  • MGIHGNC ListOf MGIGeneName
  • MGIHGNC ListOf HGNCGeneName
  • MGIHGNC MGI:97490 HGNCID
  • MGIHGNC HGNC:8620 MGIID
  • MGIHGNC Pax6
  • MGIHGNC Pax6 header (within MGIHGNC ListOf Header)
• MouseFromHuman combines these programs
  • MouseFromHuman ListOf HumanHeader
  • MouseFromHuman ListOf MouseHeader
  • MouseFromHuman Pax6
  • MouseFromHuman Pax6 header (within MouseFromHuman ListOf MouseHeader)
• HumanFromMouse combines these programs
  • FromHumanFromMouse ListOf Header
  • FromHumanFromMouse ListOf GeneName
  • FromHumanFromMouse Pax6
  • FromHumanFromMouse Pax6 header (within MouseFromHuman ListOf Header)
  • FromHumanFromMousePax6 One_Genename (the most important)

• Synonyms
  • MouseSynonyms Pax6
  • HumanSynonyms Pax6

Test it

• get all about RdCVF in the

Mouse in the Human

• get
  • Starting with the Human gene name RdCVF find the ortholog in the Mouse
  • Starting with the Mouse gene name RdCVF find the ortholog in the Human