Difference between revisions of "GeneNames"

Revision as of 15:50, 17 June 2008

GeneNames are the most important link between genes ...

Gscope has now following functions to manipulate the gene names. See the test at below

HGNC integrates a download from the HUGO Gene Nomenclature Committee
- HGNC ListOf Header
- HGNC ListOf HGNC_ID
- HGNC ListOf GeneName
- HGNC ListOf Synonym
- HGNC ListOf SynoTxt
- HGNC Pax6
- HGNC Pax6 header (within HGNC ListOf Header)
MGI integrates a download from Mouse Genome Informatics concerning the gene alias for the mouse
- MGI ListOf Header
- MGI ListOf MGIID
- MGI ListOf GeneName
- MGI Pax6
- MGI Pax6 header (within HGNC ListOf Header)
MGIHGNC integrates a download from Mouse Genome Informatics concerning the ortholgy between Mouse and Human
- MGIHGNC ListOf Header
- MGIHGNC ListOf MGIID
- MGIHGNC ListOf GeneName
- MGIHGNC Pax6
- MGIHGNC Pax6 header (within MGIHGNC ListOf Header)
MouseFromHuman combines these programs
- MouseFromHuman ListOf Header
- MouseFromHuman ListOf GeneName
HumanFromMouse combines these programs
- FromHumanFromMouse ListOf Header
- FromHumanFromMouse ListOf GeneName
- FromHumanFromMouse Pax6
- FromHumanFromMouse Pax6 header (within MouseFromHuman ListOf Header)
- FromHumanFromMousePax6 One_Genename (the most important)
- MouseFromHuman Pax6
- MouseFromHuman Pax6 header (within MouseFromHuman ListOf Header)
- MouseFromHuman Pax6 One_Genename (the most important)
Synonyms
- MouseSynonyms Pax6
- HumanSynonyms Pax6

get all about RdCVF in the Mouse in the Human
get
- Starting with the Human gene name RdCVF find the ortholog in the Mouse
- Starting with the Mouse gene name RdCVF find the ortholog in the Human

@@ Line 40: / Line 40: @@
 ==Test it==
-* get all about RdCVF in the [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/gscope_html_server.tcsh?UCSCGenomes&MGI&RdCVF Mouse] in the [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/gscope_html_server.tcsh?UCSCGenomes&HGNC&RdCVF Human]
+* get all about RdCVF in the [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/GscopeServer?MGI&RdCVF Mouse] in the [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/GscopeServer?HGNC&RdCVF Human]
 * get
-**Starting with the Human gene name RdCVF find the ortholog in the [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/gscope_html_server.tcsh?UCSCGenomes&MouseFromHuman&RdCVF&GneName Mouse]
+**Starting with the Human gene name RdCVF find the ortholog in the [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/GscopeServer?MouseFromHuman&RdCVF&GeneName Mouse]
-**Starting with the Mouse gene name RdCVF find the ortholog in the [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/gscope_html_server.tcsh?UCSCGenomes&HumanFromMouse&RdCVF&GeneName Human]
+**Starting with the Mouse gene name RdCVF find the ortholog in the [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/GscopeServer?HumanFromMouse&RdCVF&GeneName Human]