Difference between revisions of "Gscope"

Revision as of 11:22, 24 April 2009

 New : Gscope knows a lot about GeneNames

Please visit also the private Wiki Gscope Documentation Project

Gscope is an integrated platform allowing the analysis of all kind of genomic data.
Gscope is written in Tcl/Tk and runs on all systems.
Gscope is specially designed to perform high throughput analysis.
Gscope is mainly composed of
- all tools necessary to create the basic data
- analysis tools
- visualisation interface
it allows also
- the creation and feeding of SQL relational databases
- the quering and display of the available information through a web based interface (Wscope)

Gscope works on a Gscope Project (a complete genome, a set of proteins, a set of genes, etc.)
To run Gscope you need to define the corresponding project.

 setgscoperr MyProject
 gscope

If the project already exists the Gscope Environment Variables are set.
If it concerns a new project the directories are created and the variables are set. (see New Gscope Project)

Gscope Clonage to design, order and manage oligos for Structural Genomics, it's a first step to a LIMS

@@ Line 16: / Line 16: @@
 * Please visit also the private Wiki [http://lbgi.igbmc.fr/lbgiki/index.php/GDP Gscope Documentation Project]
 * [[Gscope Procedures]]
-* [[GscopeSql]]  how to access oue postgresql and mysql databases
+* [[GscopeSql]]  how to access our postgresql and mysql databases
 ==Usage==
 * Gscope works on a [[Gscope Project]] (a complete genome, a set of proteins, a set of genes, etc.)