Gscope
New : Gscope knows a lot about GeneNames
Please visit also the private Wiki Gscope Documentation Project
Contents
What is Gscope ?
- Gscope is an integrated platform allowing the analysis of all kind of genomic data.
- Gscope is written in Tcl/Tk and runs on all systems.
- Gscope is specially designed to perform high throughput analysis.
- Gscope is mainly composed of
- all tools necessary to create the basic data
- analysis tools
- visualisation interface
- it allows also
- the creation and feeding of SQL relational databases
- the quering and display of the available information through a web based interface (Wscope)
Gscope Documentation
- Please visit also the private Wiki Gscope Documentation Project
- Gscope Procedures
- GscopeSql how to access our postgresql and mysql databases
Usage
Normal usage with setgscoperr
- Gscope works on a Gscope Project (a complete genome, a set of proteins, a set of genes, etc.)
- To run Gscope you need to define the corresponding project.
setgscoperr MyProject gscope
- If the project already exists the Gscope Environment Variables are set.
- If it concerns a new project the directories are created and the variables are set. (see New Gscope Project)
You can run gscope without setgscoperr
Since 2010/08/26 it is possible to run directly gscope
gscope -project YouProject puts Command arg1 arg2 arg3
and if you are shure not to use Tk
gscope -project YouProject -notk puts Command arg1 arg2 arg3
Gscope has some specific applications
- Gscope Clonage to design, order and manage oligos for Structural Genomics, it's a first step to a LIMS
