RM17_HUMAN 2019

Gene Name RM17

Description 39S ribosomal protein L17, mitochondrial

Length 175

9606

Sequence

>sp|Q9NRX2|RM17_HUMAN 39S ribosomal protein L17, mitochondrial
MRLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEASNHSSHTAQTPGI

Domains

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What is the source the Gene Ontology annotation?

The Gene Ontology annotations are retrieved from the EBI's QuickGO webservice. Further informations are available in the external data sources section

What is the quality of these annotations?

For now, all GO term annotations, regardless of their evidence code, are displayed. No quality filter are used to provide the widest possible range of annotations. You can check the labels near each annotation for evidence details: manually reviewed annotations are displayed in blue, while the automatic ones are in grey.

Help

What is the source the domain annotation?

The domain annotations are dynamically queried from the Interpro database, using EBI webservice.

The source of these annotations is represented by a color code (see legend). You can access the corresponding Uniprot entries in Interpro by clicking on the synthetic representation of each domain.

Help

What are the distances?

The distances shown here are Jaccard distances, which are adapted to binary profiles (presence/absence).

How are they computed?

Distances between two protein of a given species are computed on phylogenetic profile of each protein in model species of the considered database.

Threshold

The goal of this section is to provide proteins with similar distributions to the query, to that end, we set a maximum threshold at 0.4

Proteins with similar distribution in the three Life domains

Identifier

Description

Distance between phylogenetic profiles

RM04_HUMAN

39S ribosomal protein L4, mitochondrial

0.233

RM03_HUMAN

39S ribosomal protein L3, mitochondrial

0.239

SYWM_HUMAN

Tryptophan--tRNA ligase, mitochondrial

0.258

EFGM_HUMAN

Elongation factor G, mitochondrial

0.262

SYYM_HUMAN

Tyrosine--tRNA ligase, mitochondrial

0.264

SYEM_HUMAN

Probable glutamate--tRNA ligase, mitochondrial

0.264

IF2M_HUMAN

Translation initiation factor IF-2, mitochondrial

0.269

RF1ML_HUMAN

Peptide chain release factor 1-like, mitochondrial

0.274

EFTU_HUMAN

Elongation factor Tu, mitochondrial

0.280

GUF1_HUMAN

Translation factor GUF1, mitochondrial

0.280

RM27_HUMAN

39S ribosomal protein L27, mitochondrial

0.289

MTG2_HUMAN

Mitochondrial ribosome-associated GTPase 2

0.291

MAP11_HUMAN

Methionine aminopeptidase 1

0.295

RM13_HUMAN

39S ribosomal protein L13, mitochondrial

0.296

RT09_HUMAN

28S ribosomal protein S9, mitochondrial

0.299

CH60_HUMAN

60 kDa heat shock protein, mitochondrial

0.303

RF1M_HUMAN

Peptide chain release factor 1, mitochondrial

0.306

OSGP2_HUMAN

Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial

0.310

RT12_HUMAN

28S ribosomal protein S12, mitochondrial

0.311

MOD5_HUMAN

tRNA dimethylallyltransferase

0.315

RPA2_HUMAN

DNA-directed RNA polymerase I subunit RPA2

0.317

RM02_HUMAN

39S ribosomal protein L2, mitochondrial

0.325

CH10_HUMAN

10 kDa heat shock protein, mitochondrial

0.329

ATPB_HUMAN

ATP synthase subunit beta, mitochondrial

0.330

CLPP_HUMAN

ATP-dependent Clp protease proteolytic subunit, mitochondrial

0.334

SYLM_HUMAN

Probable leucine--tRNA ligase, mitochondrial

0.336

ATPA_HUMAN

ATP synthase subunit alpha, mitochondrial

0.340

TACO1_HUMAN

Translational activator of cytochrome c oxidase 1

0.341

METK2_HUMAN

S-adenosylmethionine synthase isoform type-2

0.343

RT16_HUMAN

28S ribosomal protein S16, mitochondrial

0.343

ATPG_HUMAN

ATP synthase subunit gamma, mitochondrial

0.344

KGUA_HUMAN

Guanylate kinase

0.344

CLPB_HUMAN

Caseinolytic peptidase B protein homolog

0.345

GTPB3_HUMAN

tRNA modification GTPase GTPBP3, mitochondrial

0.347

SYDM_HUMAN

Aspartate--tRNA ligase, mitochondrial

0.347

RPA1_HUMAN

DNA-directed RNA polymerase I subunit RPA1

0.350

RRP5_HUMAN

Protein RRP5 homolog

0.354

RPE_HUMAN

Ribulose-phosphate 3-epimerase

0.355

METK1_HUMAN

S-adenosylmethionine synthase isoform type-1

0.355

FOLC_HUMAN

Folylpolyglutamate synthase, mitochondrial

0.355

MTU1_HUMAN

Mitochondrial tRNA-specific 2-thiouridylase 1

0.356

CLPX_HUMAN

ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial

0.359

EFTS_HUMAN

Elongation factor Ts, mitochondrial

0.360

G3P_HUMAN

Glyceraldehyde-3-phosphate dehydrogenase

0.363

PLPHP_HUMAN

Pyridoxal phosphate homeostasis protein

0.367

RRFM_HUMAN

Ribosome-recycling factor, mitochondrial

0.369

TPIS_HUMAN

Triosephosphate isomerase

0.371

AFG32_HUMAN

AFG3-like protein 2

0.373

RT02_HUMAN

28S ribosomal protein S2, mitochondrial

0.375

RPEL1_HUMAN

Ribulose-phosphate 3-epimerase-like protein 1

0.375

SYK_HUMAN

Lysine--tRNA ligase

0.380

GRP75_HUMAN

Stress-70 protein, mitochondrial

0.382

ABCF3_HUMAN

ATP-binding cassette sub-family F member 3

0.383

GPDA_HUMAN

Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

0.383

OXSM_HUMAN

3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial

0.384

RPC1_HUMAN

DNA-directed RNA polymerase III subunit RPC1

0.384

TKT_HUMAN

Transketolase

0.386

GPD1L_HUMAN

Glycerol-3-phosphate dehydrogenase 1-like protein

0.387

TRUB1_HUMAN

Probable tRNA pseudouridine synthase 1

0.388

TOP2B_HUMAN

DNA topoisomerase 2-beta

0.391

ACPM_HUMAN

Acyl carrier protein, mitochondrial

0.392

ABCF2_HUMAN

ATP-binding cassette sub-family F member 2

0.392

PUR9_HUMAN

Bifunctional purine biosynthesis protein PURH

0.394

TOP2A_HUMAN

DNA topoisomerase 2-alpha

0.394

DNJA3_HUMAN

DnaJ homolog subfamily A member 3, mitochondrial

0.397

RM11_HUMAN

39S ribosomal protein L11, mitochondrial

0.398

Proteins with similar distribution in Eukaryota

Identifier

Description

Distance between phylogenetic profiles

RM04_HUMAN

39S ribosomal protein L4, mitochondrial

0.233

RM03_HUMAN

39S ribosomal protein L3, mitochondrial

0.239

SYWM_HUMAN

Tryptophan--tRNA ligase, mitochondrial

0.258

EFGM_HUMAN

Elongation factor G, mitochondrial

0.262

SYYM_HUMAN

Tyrosine--tRNA ligase, mitochondrial

0.264

SYEM_HUMAN

Probable glutamate--tRNA ligase, mitochondrial

0.264

IF2M_HUMAN

Translation initiation factor IF-2, mitochondrial

0.269

RF1ML_HUMAN

Peptide chain release factor 1-like, mitochondrial

0.274

EFTU_HUMAN

Elongation factor Tu, mitochondrial

0.280

GUF1_HUMAN

Translation factor GUF1, mitochondrial

0.280

RM27_HUMAN

39S ribosomal protein L27, mitochondrial

0.289

MTG2_HUMAN

Mitochondrial ribosome-associated GTPase 2

0.291

MAP11_HUMAN

Methionine aminopeptidase 1

0.295

RM13_HUMAN

39S ribosomal protein L13, mitochondrial

0.296

RT09_HUMAN

28S ribosomal protein S9, mitochondrial

0.299

CH60_HUMAN

60 kDa heat shock protein, mitochondrial

0.303

RF1M_HUMAN

Peptide chain release factor 1, mitochondrial

0.306

OSGP2_HUMAN

Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial

0.310

RT12_HUMAN

28S ribosomal protein S12, mitochondrial

0.311

MOD5_HUMAN

tRNA dimethylallyltransferase

0.315

RPA2_HUMAN

DNA-directed RNA polymerase I subunit RPA2

0.317

RM02_HUMAN

39S ribosomal protein L2, mitochondrial

0.325

CH10_HUMAN

10 kDa heat shock protein, mitochondrial

0.329

ATPB_HUMAN

ATP synthase subunit beta, mitochondrial

0.330

CLPP_HUMAN

ATP-dependent Clp protease proteolytic subunit, mitochondrial

0.334

SYLM_HUMAN

Probable leucine--tRNA ligase, mitochondrial

0.336

ATPA_HUMAN

ATP synthase subunit alpha, mitochondrial

0.340

TACO1_HUMAN

Translational activator of cytochrome c oxidase 1

0.341

METK2_HUMAN

S-adenosylmethionine synthase isoform type-2

0.343

RT16_HUMAN

28S ribosomal protein S16, mitochondrial

0.343

ATPG_HUMAN

ATP synthase subunit gamma, mitochondrial

0.344

KGUA_HUMAN

Guanylate kinase

0.344

CLPB_HUMAN

Caseinolytic peptidase B protein homolog

0.345

GTPB3_HUMAN

tRNA modification GTPase GTPBP3, mitochondrial

0.347

SYDM_HUMAN

Aspartate--tRNA ligase, mitochondrial

0.347

RPA1_HUMAN

DNA-directed RNA polymerase I subunit RPA1

0.350

RRP5_HUMAN

Protein RRP5 homolog

0.354

RPE_HUMAN

Ribulose-phosphate 3-epimerase

0.355

METK1_HUMAN

S-adenosylmethionine synthase isoform type-1

0.355

FOLC_HUMAN

Folylpolyglutamate synthase, mitochondrial

0.355

MTU1_HUMAN

Mitochondrial tRNA-specific 2-thiouridylase 1

0.356

CLPX_HUMAN

ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial

0.359

EFTS_HUMAN

Elongation factor Ts, mitochondrial

0.360

G3P_HUMAN

Glyceraldehyde-3-phosphate dehydrogenase

0.363

PLPHP_HUMAN

Pyridoxal phosphate homeostasis protein

0.367

RRFM_HUMAN

Ribosome-recycling factor, mitochondrial

0.369

TPIS_HUMAN

Triosephosphate isomerase

0.371

AFG32_HUMAN

AFG3-like protein 2

0.373

RT02_HUMAN

28S ribosomal protein S2, mitochondrial

0.375

RPEL1_HUMAN

Ribulose-phosphate 3-epimerase-like protein 1

0.375

SYK_HUMAN

Lysine--tRNA ligase

0.380

GRP75_HUMAN

Stress-70 protein, mitochondrial

0.382

ABCF3_HUMAN

ATP-binding cassette sub-family F member 3

0.383

GPDA_HUMAN

Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

0.383

OXSM_HUMAN

3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial

0.384

RPC1_HUMAN

DNA-directed RNA polymerase III subunit RPC1

0.384

TKT_HUMAN

Transketolase

0.386

GPD1L_HUMAN

Glycerol-3-phosphate dehydrogenase 1-like protein

0.387

TRUB1_HUMAN

Probable tRNA pseudouridine synthase 1

0.388

TOP2B_HUMAN

DNA topoisomerase 2-beta

0.391

ACPM_HUMAN

Acyl carrier protein, mitochondrial

0.392

ABCF2_HUMAN

ATP-binding cassette sub-family F member 2

0.392

PUR9_HUMAN

Bifunctional purine biosynthesis protein PURH

0.394

TOP2A_HUMAN

DNA topoisomerase 2-alpha

0.394

DNJA3_HUMAN

DnaJ homolog subfamily A member 3, mitochondrial

0.397

RM11_HUMAN

39S ribosomal protein L11, mitochondrial

0.398

Orthologs and taxonomic distribution

Eukaryota: Model Organisms
Eukaryota: Whole domain
Three domains

Orthologs found in 300 organisms (of 369)

Taxonomic distribution summary

Help

This section gives an overview of the taxonomic distribution of orthologs in representative clades. Clade names correspond to NCBI taxonomy or to the accepted consensus. Classification of each species into clade is available here

Legend:

Heatmap

Each labelled tile corresponds to a clade and is colored according to the proportion of species in the clade with at least one ortholog using the following scale:

25%

50%

75%

100%

Hover on the heatmap to see the total number of species in which orthologs were found.

Tiles framed in blue indicate the clade for which a 'focused' view is available, you can click the tile to reveal it

Labels

Label colors correspond to one of three domains of Life

Eukaryota

Archaea

Bacteria

Inparalogs

When inparalogs (genes in query species resulting from a duplication event posterior to the speciation with target species) are detected, they can be displayed under the 'See Inparalogs' button. A indicates that this protein is a predicted inparalog to the query protein, relatively to (at least) one species of this clade.

Not found in

The 'Not found in' button offers the list of species in which orthologs where not found, ordered clade by clade

See inparalogs

Orthologs not found in

	Relationship type	Query & inparalogs	Orthologs	Orthologs length	Species	Taxid		Taxonomy	Whole Taxonomy