RT23_HUMAN 2019

Gene Name RT23

Description 28S ribosomal protein S23, mitochondrial

Length 190

9606

Sequence

>sp|Q9Y3D9|RT23_HUMAN 28S ribosomal protein S23, mitochondrial
MAGSRLETVGSIFSRTRDLVRAGVLKEKPLWFDVYDAFPPLREPVFQRPRVRYGKAKAPIQDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQKLGETDEEKLFVETGKALLAEGVILRRVGEARTQHGGSHVSRKSEHLSVRPQTALEENETQKEVPQDQHLEAPADQSKGLLPP

Domains

Loading...

Help

What is the source the Gene Ontology annotation?

The Gene Ontology annotations are retrieved from the EBI's QuickGO webservice. Further informations are available in the external data sources section

What is the quality of these annotations?

For now, all GO term annotations, regardless of their evidence code, are displayed. No quality filter are used to provide the widest possible range of annotations. You can check the labels near each annotation for evidence details: manually reviewed annotations are displayed in blue, while the automatic ones are in grey.

Help

What is the source the domain annotation?

The domain annotations are dynamically queried from the Interpro database, using EBI webservice.

The source of these annotations is represented by a color code (see legend). You can access the corresponding Uniprot entries in Interpro by clicking on the synthetic representation of each domain.

Help

What are the distances?

The distances shown here are Jaccard distances, which are adapted to binary profiles (presence/absence).

How are they computed?

Distances between two protein of a given species are computed on phylogenetic profile of each protein in model species of the considered database.

Threshold

The goal of this section is to provide proteins with similar distributions to the query, to that end, we set a maximum threshold at 0.4

Proteins with similar distribution in the three Life domains

Identifier

Description

Distance between phylogenetic profiles

XKR6_HUMAN

XK-related protein 6

0.302

GO45_HUMAN

Golgin-45

0.333

TXD11_HUMAN

Thioredoxin domain-containing protein 11

0.337

BMP4_HUMAN

Bone morphogenetic protein 4

0.357

HLF_HUMAN

Hepatic leukemia factor

0.357

PROM1_HUMAN

Prominin-1

0.357

K2013_HUMAN

Uncharacterized protein KIAA2013

0.365

DAB1_HUMAN

Disabled homolog 1

0.365

TMCC3_HUMAN

Transmembrane and coiled-coil domain protein 3

0.369

LRC59_HUMAN

Leucine-rich repeat-containing protein 59

0.369

MB12B_HUMAN

Multivesicular body subunit 12B

0.369

XKR7_HUMAN

XK-related protein 7

0.374

CG026_HUMAN

Uncharacterized protein C7orf26

0.374

CREL2_HUMAN

Cysteine-rich with EGF-like domain protein 2

0.382

WLS_HUMAN

Protein wntless homolog

0.382

CPEB3_HUMAN

Cytoplasmic polyadenylation element-binding protein 3

0.382

MY18A_HUMAN

Unconventional myosin-XVIIIa

0.383

TEF_HUMAN

Thyrotroph embryonic factor

0.386

FOXO1_HUMAN

Forkhead box protein O1

0.386

FEM1C_HUMAN

Protein fem-1 homolog C

0.386

AP2A_HUMAN

Transcription factor AP-2-alpha

0.386

NFIA_HUMAN

Nuclear factor 1 A-type

0.386

FOXO3_HUMAN

Forkhead box protein O3

0.386

CREL1_HUMAN

Cysteine-rich with EGF-like domain protein 1

0.386

AP2B_HUMAN

Transcription factor AP-2-beta

0.386

FA8A1_HUMAN

Protein FAM8A1

0.386

NFIB_HUMAN

Nuclear factor 1 B-type

0.386

FABP7_HUMAN

Fatty acid-binding protein, brain

0.386

NR5A2_HUMAN

Nuclear receptor subfamily 5 group A member 2

0.386

TSN5_HUMAN

Tetraspanin-5

0.386

TTC17_HUMAN

Tetratricopeptide repeat protein 17

0.390

RXRA_HUMAN

Retinoic acid receptor RXR-alpha

0.390

DAG1_HUMAN

Dystroglycan

0.390

NDUBA_HUMAN

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10

0.390

RT30_HUMAN

39S ribosomal protein S30, mitochondrial

0.390

ERBB2_HUMAN

Receptor tyrosine-protein kinase erbB-2

0.390

FBX25_HUMAN

F-box only protein 25

0.390

PEBB_HUMAN

Core-binding factor subunit beta

0.390

RT31_HUMAN

28S ribosomal protein S31, mitochondrial

0.390

HME2_HUMAN

Homeobox protein engrailed-2

0.394

HAND2_HUMAN

Heart- and neural crest derivatives-expressed protein 2

0.394

TSHR_HUMAN

Thyrotropin receptor

0.394

MCF2L_HUMAN

Guanine nucleotide exchange factor DBS

0.394

MAFK_HUMAN

Transcription factor MafK

0.394

IKKE_HUMAN

Inhibitor of nuclear factor kappa-B kinase subunit epsilon

0.394

NR2C1_HUMAN

Nuclear receptor subfamily 2 group C member 1

0.394

DAB2_HUMAN

Disabled homolog 2

0.394

NAB1_HUMAN

NGFI-A-binding protein 1

0.394

JIP1_HUMAN

C-Jun-amino-terminal kinase-interacting protein 1

0.394

SEM6A_HUMAN

Semaphorin-6A

0.399

RORB_HUMAN

Nuclear receptor ROR-beta

0.399

RYK_HUMAN

Tyrosine-protein kinase RYK

0.399

LEG8_HUMAN

Galectin-8

0.399

NAB2_HUMAN

NGFI-A-binding protein 2

0.399

GNRHR_HUMAN

Gonadotropin-releasing hormone receptor

0.399

AMOL2_HUMAN

Angiomotin-like protein 2

0.399

TMCC1_HUMAN

Transmembrane and coiled-coil domains protein 1

0.399

Proteins with similar distribution in Eukaryota

Identifier

Description

Distance between phylogenetic profiles

TTC17_HUMAN

Tetratricopeptide repeat protein 17

0.354

DAB1_HUMAN

Disabled homolog 1

0.357

DAB2_HUMAN

Disabled homolog 2

0.365

PEBB_HUMAN

Core-binding factor subunit beta

0.367

TEF_HUMAN

Thyrotroph embryonic factor

0.367

BCL7B_HUMAN

B-cell CLL/lymphoma 7 protein family member B

0.374

KBRS2_HUMAN

NF-kappa-B inhibitor-interacting Ras-like protein 2

0.375

BMP2_HUMAN

Bone morphogenetic protein 2

0.377

AT1B4_HUMAN

Protein ATP1B4

0.378

AT1B1_HUMAN

Sodium/potassium-transporting ATPase subunit beta-1

0.378

ILF2_HUMAN

Interleukin enhancer-binding factor 2

0.379

BMP4_HUMAN

Bone morphogenetic protein 4

0.379

RT22_HUMAN

28S ribosomal protein S22, mitochondrial

0.379

RGAP1_HUMAN

Rac GTPase-activating protein 1

0.382

TSHR_HUMAN

Thyrotropin receptor

0.383

ARFP1_HUMAN

Arfaptin-1

0.383

JIP1_HUMAN

C-Jun-amino-terminal kinase-interacting protein 1

0.384

OFUT1_HUMAN

GDP-fucose protein O-fucosyltransferase 1

0.384

HLF_HUMAN

Hepatic leukemia factor

0.385

PP4P2_HUMAN

Type 2 phosphatidylinositol 4,5-bisphosphate 4-phosphatase

0.386

ARFP2_HUMAN

Arfaptin-2

0.391

GLCE_HUMAN

D-glucuronyl C5-epimerase

0.391

JIP4_HUMAN

C-Jun-amino-terminal kinase-interacting protein 4

0.391

APBA1_HUMAN

Amyloid-beta A4 precursor protein-binding family A member 1

0.391

FOXO3_HUMAN

Forkhead box protein O3

0.391

RUND1_HUMAN

RUN domain-containing protein 1

0.392

TSN5_HUMAN

Tetraspanin-5

0.392

AT1B3_HUMAN

Sodium/potassium-transporting ATPase subunit beta-3

0.392

TMCC1_HUMAN

Transmembrane and coiled-coil domains protein 1

0.392

ZO1_HUMAN

Tight junction protein ZO-1

0.393

PRIC2_HUMAN

Prickle-like protein 2

0.393

FA8A1_HUMAN

Protein FAM8A1

0.393

CYLD_HUMAN

Ubiquitin carboxyl-terminal hydrolase CYLD

0.393

MACOI_HUMAN

Macoilin

0.393

ITB1_HUMAN

Integrin beta-1

0.393

CSPG4_HUMAN

Chondroitin sulfate proteoglycan 4

0.395

SUSD2_HUMAN

Sushi domain-containing protein 2

0.396

FERM2_HUMAN

Fermitin family homolog 2

0.396

KPBB_HUMAN

Phosphorylase b kinase regulatory subunit beta

0.396

SNX27_HUMAN

Sorting nexin-27

0.396

WLS_HUMAN

Protein wntless homolog

0.396

TM38A_HUMAN

Trimeric intracellular cation channel type A

0.396

TRIO_HUMAN

Triple functional domain protein

0.396

FERM1_HUMAN

Fermitin family homolog 1

0.396

PAR6B_HUMAN

Partitioning defective 6 homolog beta

0.396

APBA2_HUMAN

Amyloid-beta A4 precursor protein-binding family A member 2

0.396

CAPON_HUMAN

Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein

0.397

K2013_HUMAN

Uncharacterized protein KIAA2013

0.397

RHG42_HUMAN

Rho GTPase-activating protein 42

0.397

LRRF2_HUMAN

Leucine-rich repeat flightless-interacting protein 2

0.398

CSTN1_HUMAN

Calsyntenin-1

0.398

ZO2_HUMAN

Tight junction protein ZO-2

0.399

UNC5D_HUMAN

Netrin receptor UNC5D

0.399

FOXO1_HUMAN

Forkhead box protein O1

0.399

ERP44_HUMAN

Endoplasmic reticulum resident protein 44

0.399

CSKP_HUMAN

Peripheral plasma membrane protein CASK

0.399

RC3H1_HUMAN

Roquin-1

0.400

DDR2_HUMAN

Discoidin domain-containing receptor 2

0.400

KPCD3_HUMAN

Serine/threonine-protein kinase D3

0.400

STON2_HUMAN

Stonin-2

0.400

PRIC1_HUMAN

Prickle-like protein 1

0.400

Orthologs and taxonomic distribution

Eukaryota: Model Organisms
Eukaryota: Whole domain
Three domains

Orthologs found in 41 organisms (of 162)

Taxonomic distribution summary

Help

This section gives an overview of the taxonomic distribution of orthologs in representative clades. Clade names correspond to NCBI taxonomy or to the accepted consensus. Classification of each species into clade is available here

Legend:

Heatmap

Each labelled tile corresponds to a clade and is colored according to the proportion of species in the clade with at least one ortholog using the following scale:

25%

50%

75%

100%

Hover on the heatmap to see the total number of species in which orthologs were found.

Tiles framed in blue indicate the clade for which a 'focused' view is available, you can click the tile to reveal it

Labels

Label colors correspond to one of three domains of Life

Eukaryota

Archaea

Bacteria

Inparalogs

When inparalogs (genes in query species resulting from a duplication event posterior to the speciation with target species) are detected, they can be displayed under the 'See Inparalogs' button. A indicates that this protein is a predicted inparalog to the query protein, relatively to (at least) one species of this clade.

Not found in

The 'Not found in' button offers the list of species in which orthologs where not found, ordered clade by clade

See inparalogs

Orthologs not found in

	Relationship type	Query & inparalogs	Orthologs	Orthologs length	Species	Taxid		Taxonomy	Whole Taxonomy